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human ybx1 construct  (Novus Biologicals)


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    Structured Review

    Novus Biologicals human ybx1 construct
    High confidence TAM-induced protein stability hits.
    Human Ybx1 Construct, supplied by Novus Biologicals, used in various techniques. Bioz Stars score: 92/100, based on 4 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/human+ybx1+construct/Recombinant+Human+YB1+His+Protein/pmc05695045-183-16-19
    Average 92 stars, based on 4 article reviews
    human ybx1 construct - by Bioz Stars, 2026-10
    92/100 stars

    Images

    1) Product Images from "Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements"

    Article Title: Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements

    Journal: Journal of proteome research

    doi: 10.1021/acs.jproteome.7b00442

    High confidence TAM-induced protein stability hits.
    Figure Legend Snippet: High confidence TAM-induced protein stability hits.

    Techniques Used: Multiplex sample analysis

    Pulse proteolysis with purified recombinant YBX1 +/− TAM. A) Pulse proteolysis of YBX1 +/− TAM in increasing concentration of urea. Red box depicting TAM-induced difference at 0.75 M Urea. B) Intact YBX1 and pulse proteolysis of YBX1 in the absence of TAM at low and high denaturant.
    Figure Legend Snippet: Pulse proteolysis with purified recombinant YBX1 +/− TAM. A) Pulse proteolysis of YBX1 +/− TAM in increasing concentration of urea. Red box depicting TAM-induced difference at 0.75 M Urea. B) Intact YBX1 and pulse proteolysis of YBX1 in the absence of TAM at low and high denaturant.

    Techniques Used: Purification, Recombinant, Concentration Assay

    SPROX data generated on YBX1 +/− TAM. The filled circles represent data generated on the YBX1 peptide RPQYSNPPVQGEVMEGADNQGAGEQGRPVR in the PAB-SPROX analysis of the purified recombinant YBX1 construct. The open circles represent data on the oxidized version of the same YBX1 peptide in the SILAC-SPROX analysis of the unpurified protein in the MCF-7 cell lysate. Both data sets are consistent with a TAM-induced stabilization of YBX1.
    Figure Legend Snippet: SPROX data generated on YBX1 +/− TAM. The filled circles represent data generated on the YBX1 peptide RPQYSNPPVQGEVMEGADNQGAGEQGRPVR in the PAB-SPROX analysis of the purified recombinant YBX1 construct. The open circles represent data on the oxidized version of the same YBX1 peptide in the SILAC-SPROX analysis of the unpurified protein in the MCF-7 cell lysate. Both data sets are consistent with a TAM-induced stabilization of YBX1.

    Techniques Used: Generated, Purification, Recombinant, Construct, Multiplex sample analysis

    STRING analysis of the 27 high-confidence TAM and NDT hits. The STRING analysis was conducted using medium confidence data from experiments. Also included in the STRING analysis were the MAPK1, AKT1 and ESR1 (see text). The red dashed line represents an experimentally observed direct interaction between ER and YBX1 that was recently reported in reference.34
    Figure Legend Snippet: STRING analysis of the 27 high-confidence TAM and NDT hits. The STRING analysis was conducted using medium confidence data from experiments. Also included in the STRING analysis were the MAPK1, AKT1 and ESR1 (see text). The red dashed line represents an experimentally observed direct interaction between ER and YBX1 that was recently reported in reference.34

    Techniques Used:

    Related Articles

    Purification:

    Article Title: Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements
    Article Snippet: Samples were heated to 95°C for 5 minutes before a 40 μL aliquot of each sample was loaded onto a 4%–20% midsize polyacrylamide gel (BioRad Criterion, Hercules, CA, USA) and subject to an electrophoretic separation and visualization with coomassie staining. .. A PAB-SPROX experiment was performed on a purified recombinant human YBX1 construct (Novus Biologicals, #NBP2-30101) both in the presence and absence of TAM according to a previously established protocol 23 . ..

    Article Title: Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements
    Article Snippet: .. A pulse proteolysis experiment was performed on a purified recombinant human YBX1 construct (Novus Biologicals, #NBP2-30101) both in the presence and absence of TAM. .. Recombinant YBX1 was buffer exchanged on a 10 kDa MWCO filter (Amicon Ultra-0.5, EMD Millipore) with 100 mM Tris pH 8.0 to a protein concentration of ~0.5 μg/μL.

    Article Title: Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements
    Article Snippet: .. Pulse Proteolysis Protocol A pulse proteolysis experiment was performed on a purified recombinant human YBX1 construct (Novus Biologicals, #NBP2-30101) both in the presence and absence of TAM. .. Recombinant YBX1 was buffer exchanged on a 10 kDa MWCO filter (Amicon Ultra-0.5, EMD Millipore) with 100 mM Tris pH 8.0 to a protein concentration of ~0.5 μg/μL.

    Article Title: Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements.
    Article Snippet: .. A pulse proteolysis experiment was performed on a purified recombinant human YBX1 construct (Novus Biologicals, #NBP2-30101) both in the presence and absence of TAM. .. Recombinant YBX1 was buffer exchanged on a 10 kDa MWCO filter (Amicon Ultra-0.5, EMD Millipore) with 100 mM Tris pH 8.0 to a protein concentration of ∼0.5 μg/μL.

    Article Title: Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements
    Article Snippet: Samples were heated to 95°C for 5 minutes before a 40 μL aliquot of each sample was loaded onto a 4%–20% midsize polyacrylamide gel (BioRad Criterion, Hercules, CA, USA) and subject to an electrophoretic separation and visualization with coomassie staining. .. SPROX Protocol with Phenacyl Bromide Labelling (PAB-SPROX) A PAB-SPROX experiment was performed on a purified recombinant human YBX1 construct (Novus Biologicals, #NBP2-30101) both in the presence and absence of TAM according to a previously established protocol 23 . ..

    Article Title: Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements.
    Article Snippet: Samples were heated at 95 °C for 5 min before a 40 μL aliquot of each sample was loaded onto a 4−20% midsize polyacrylamide gel (BioRad Criterion, Hercules, CA, USA) and subjected to electrophoretic separation and visualization with Coomassie staining. .. A PAB-SPROX experiment was performed on a purified recombinant human YBX1 construct (Novus Biologicals, #NBP2-30101) both in the presence and absence of TAM according to a previously established protocol.23 Briefly, 70 μL aliquots of a 1 mg/mL solution of recombinant YBX1 in 20 mM phosphate buffer (pH 7.4) were combined with either 7.7 μL of a 3 mM TAM solution prepared in DMSO or 7.7 μL of DMSO to generate the (+) and (−) ligand samples, respectively. ..

    Recombinant:

    Article Title: Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements
    Article Snippet: Samples were heated to 95°C for 5 minutes before a 40 μL aliquot of each sample was loaded onto a 4%–20% midsize polyacrylamide gel (BioRad Criterion, Hercules, CA, USA) and subject to an electrophoretic separation and visualization with coomassie staining. .. A PAB-SPROX experiment was performed on a purified recombinant human YBX1 construct (Novus Biologicals, #NBP2-30101) both in the presence and absence of TAM according to a previously established protocol 23 . ..

    Article Title: Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements
    Article Snippet: .. A pulse proteolysis experiment was performed on a purified recombinant human YBX1 construct (Novus Biologicals, #NBP2-30101) both in the presence and absence of TAM. .. Recombinant YBX1 was buffer exchanged on a 10 kDa MWCO filter (Amicon Ultra-0.5, EMD Millipore) with 100 mM Tris pH 8.0 to a protein concentration of ~0.5 μg/μL.

    Article Title: Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements
    Article Snippet: .. Pulse Proteolysis Protocol A pulse proteolysis experiment was performed on a purified recombinant human YBX1 construct (Novus Biologicals, #NBP2-30101) both in the presence and absence of TAM. .. Recombinant YBX1 was buffer exchanged on a 10 kDa MWCO filter (Amicon Ultra-0.5, EMD Millipore) with 100 mM Tris pH 8.0 to a protein concentration of ~0.5 μg/μL.

    Article Title: Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements.
    Article Snippet: .. A pulse proteolysis experiment was performed on a purified recombinant human YBX1 construct (Novus Biologicals, #NBP2-30101) both in the presence and absence of TAM. .. Recombinant YBX1 was buffer exchanged on a 10 kDa MWCO filter (Amicon Ultra-0.5, EMD Millipore) with 100 mM Tris pH 8.0 to a protein concentration of ∼0.5 μg/μL.

    Article Title: Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements
    Article Snippet: Samples were heated to 95°C for 5 minutes before a 40 μL aliquot of each sample was loaded onto a 4%–20% midsize polyacrylamide gel (BioRad Criterion, Hercules, CA, USA) and subject to an electrophoretic separation and visualization with coomassie staining. .. SPROX Protocol with Phenacyl Bromide Labelling (PAB-SPROX) A PAB-SPROX experiment was performed on a purified recombinant human YBX1 construct (Novus Biologicals, #NBP2-30101) both in the presence and absence of TAM according to a previously established protocol 23 . ..

    Article Title: Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements.
    Article Snippet: Samples were heated at 95 °C for 5 min before a 40 μL aliquot of each sample was loaded onto a 4−20% midsize polyacrylamide gel (BioRad Criterion, Hercules, CA, USA) and subjected to electrophoretic separation and visualization with Coomassie staining. .. A PAB-SPROX experiment was performed on a purified recombinant human YBX1 construct (Novus Biologicals, #NBP2-30101) both in the presence and absence of TAM according to a previously established protocol.23 Briefly, 70 μL aliquots of a 1 mg/mL solution of recombinant YBX1 in 20 mM phosphate buffer (pH 7.4) were combined with either 7.7 μL of a 3 mM TAM solution prepared in DMSO or 7.7 μL of DMSO to generate the (+) and (−) ligand samples, respectively. ..

    Construct:

    Article Title: Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements
    Article Snippet: Samples were heated to 95°C for 5 minutes before a 40 μL aliquot of each sample was loaded onto a 4%–20% midsize polyacrylamide gel (BioRad Criterion, Hercules, CA, USA) and subject to an electrophoretic separation and visualization with coomassie staining. .. A PAB-SPROX experiment was performed on a purified recombinant human YBX1 construct (Novus Biologicals, #NBP2-30101) both in the presence and absence of TAM according to a previously established protocol 23 . ..

    Article Title: Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements
    Article Snippet: .. A pulse proteolysis experiment was performed on a purified recombinant human YBX1 construct (Novus Biologicals, #NBP2-30101) both in the presence and absence of TAM. .. Recombinant YBX1 was buffer exchanged on a 10 kDa MWCO filter (Amicon Ultra-0.5, EMD Millipore) with 100 mM Tris pH 8.0 to a protein concentration of ~0.5 μg/μL.

    Article Title: Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements
    Article Snippet: .. Pulse Proteolysis Protocol A pulse proteolysis experiment was performed on a purified recombinant human YBX1 construct (Novus Biologicals, #NBP2-30101) both in the presence and absence of TAM. .. Recombinant YBX1 was buffer exchanged on a 10 kDa MWCO filter (Amicon Ultra-0.5, EMD Millipore) with 100 mM Tris pH 8.0 to a protein concentration of ~0.5 μg/μL.

    Article Title: Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements.
    Article Snippet: .. A pulse proteolysis experiment was performed on a purified recombinant human YBX1 construct (Novus Biologicals, #NBP2-30101) both in the presence and absence of TAM. .. Recombinant YBX1 was buffer exchanged on a 10 kDa MWCO filter (Amicon Ultra-0.5, EMD Millipore) with 100 mM Tris pH 8.0 to a protein concentration of ∼0.5 μg/μL.

    Article Title: Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements
    Article Snippet: Samples were heated to 95°C for 5 minutes before a 40 μL aliquot of each sample was loaded onto a 4%–20% midsize polyacrylamide gel (BioRad Criterion, Hercules, CA, USA) and subject to an electrophoretic separation and visualization with coomassie staining. .. SPROX Protocol with Phenacyl Bromide Labelling (PAB-SPROX) A PAB-SPROX experiment was performed on a purified recombinant human YBX1 construct (Novus Biologicals, #NBP2-30101) both in the presence and absence of TAM according to a previously established protocol 23 . ..

    Article Title: Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements.
    Article Snippet: Samples were heated at 95 °C for 5 min before a 40 μL aliquot of each sample was loaded onto a 4−20% midsize polyacrylamide gel (BioRad Criterion, Hercules, CA, USA) and subjected to electrophoretic separation and visualization with Coomassie staining. .. A PAB-SPROX experiment was performed on a purified recombinant human YBX1 construct (Novus Biologicals, #NBP2-30101) both in the presence and absence of TAM according to a previously established protocol.23 Briefly, 70 μL aliquots of a 1 mg/mL solution of recombinant YBX1 in 20 mM phosphate buffer (pH 7.4) were combined with either 7.7 μL of a 3 mM TAM solution prepared in DMSO or 7.7 μL of DMSO to generate the (+) and (−) ligand samples, respectively. ..



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    Image Search Results


    High confidence TAM-induced protein stability hits.

    Journal: Journal of proteome research

    Article Title: Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements

    doi: 10.1021/acs.jproteome.7b00442

    Figure Lengend Snippet: High confidence TAM-induced protein stability hits.

    Article Snippet: SPROX Protocol with Phenacyl Bromide Labelling (PAB-SPROX) A PAB-SPROX experiment was performed on a purified recombinant human YBX1 construct (Novus Biologicals, #NBP2-30101) both in the presence and absence of TAM according to a previously established protocol 23 .

    Techniques: Multiplex sample analysis

    Pulse proteolysis with purified recombinant YBX1 +/− TAM. A) Pulse proteolysis of YBX1 +/− TAM in increasing concentration of urea. Red box depicting TAM-induced difference at 0.75 M Urea. B) Intact YBX1 and pulse proteolysis of YBX1 in the absence of TAM at low and high denaturant.

    Journal: Journal of proteome research

    Article Title: Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements

    doi: 10.1021/acs.jproteome.7b00442

    Figure Lengend Snippet: Pulse proteolysis with purified recombinant YBX1 +/− TAM. A) Pulse proteolysis of YBX1 +/− TAM in increasing concentration of urea. Red box depicting TAM-induced difference at 0.75 M Urea. B) Intact YBX1 and pulse proteolysis of YBX1 in the absence of TAM at low and high denaturant.

    Article Snippet: SPROX Protocol with Phenacyl Bromide Labelling (PAB-SPROX) A PAB-SPROX experiment was performed on a purified recombinant human YBX1 construct (Novus Biologicals, #NBP2-30101) both in the presence and absence of TAM according to a previously established protocol 23 .

    Techniques: Purification, Recombinant, Concentration Assay

    SPROX data generated on YBX1 +/− TAM. The filled circles represent data generated on the YBX1 peptide RPQYSNPPVQGEVMEGADNQGAGEQGRPVR in the PAB-SPROX analysis of the purified recombinant YBX1 construct. The open circles represent data on the oxidized version of the same YBX1 peptide in the SILAC-SPROX analysis of the unpurified protein in the MCF-7 cell lysate. Both data sets are consistent with a TAM-induced stabilization of YBX1.

    Journal: Journal of proteome research

    Article Title: Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements

    doi: 10.1021/acs.jproteome.7b00442

    Figure Lengend Snippet: SPROX data generated on YBX1 +/− TAM. The filled circles represent data generated on the YBX1 peptide RPQYSNPPVQGEVMEGADNQGAGEQGRPVR in the PAB-SPROX analysis of the purified recombinant YBX1 construct. The open circles represent data on the oxidized version of the same YBX1 peptide in the SILAC-SPROX analysis of the unpurified protein in the MCF-7 cell lysate. Both data sets are consistent with a TAM-induced stabilization of YBX1.

    Article Snippet: SPROX Protocol with Phenacyl Bromide Labelling (PAB-SPROX) A PAB-SPROX experiment was performed on a purified recombinant human YBX1 construct (Novus Biologicals, #NBP2-30101) both in the presence and absence of TAM according to a previously established protocol 23 .

    Techniques: Generated, Purification, Recombinant, Construct, Multiplex sample analysis

    STRING analysis of the 27 high-confidence TAM and NDT hits. The STRING analysis was conducted using medium confidence data from experiments. Also included in the STRING analysis were the MAPK1, AKT1 and ESR1 (see text). The red dashed line represents an experimentally observed direct interaction between ER and YBX1 that was recently reported in reference.34

    Journal: Journal of proteome research

    Article Title: Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements

    doi: 10.1021/acs.jproteome.7b00442

    Figure Lengend Snippet: STRING analysis of the 27 high-confidence TAM and NDT hits. The STRING analysis was conducted using medium confidence data from experiments. Also included in the STRING analysis were the MAPK1, AKT1 and ESR1 (see text). The red dashed line represents an experimentally observed direct interaction between ER and YBX1 that was recently reported in reference.34

    Article Snippet: SPROX Protocol with Phenacyl Bromide Labelling (PAB-SPROX) A PAB-SPROX experiment was performed on a purified recombinant human YBX1 construct (Novus Biologicals, #NBP2-30101) both in the presence and absence of TAM according to a previously established protocol 23 .

    Techniques:

    Table 1

    Journal: Cancer research

    Article Title: ER alpha binding by transcription factors NFIB and YBX1 enables FGFR2 signalling to modulate estrogen responsiveness in breast cancer

    doi: 10.1158/0008-5472.CAN-17-1153

    Figure Lengend Snippet: Table 1

    Article Snippet: The NFIB/YBX1-Cerulean and NFIB/YBX1-Venus constructs were created similarly (from plasmids RC231275 (NFIB) and RC209835 (YBX1); OriGene).

    Techniques: